User: abc

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abc30
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Posts by abc

<prev • 34 results • page 1 of 4 • next >
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Comment: C: How to calculate the shortest path between each pairs of genes in WGCNA
... Thanks for the reply. Then which output should be used (Adjacency, TOM or dissTOM)? ...
written 5 months ago by abc30
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How to calculate the shortest path between each pairs of genes in WGCNA
... I would like to have the shortest path or distance between different pairs of genes in a network constructed by WGCNA R package. ...
wgcna gene co-expression analysis R written 5 months ago by abc30 • updated 5 months ago by Benn7.0k
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Answer: A: How should I define contrast with more than 2 levels in DESeq2 ?
... You have to use "name" argument in "result" function which is the name of the individual effect (coefficient) for building a results table. Use this argument rather than contrast for continuous variables, individual effects or for individual interaction terms. ...
written 2.6 years ago by abc30
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Comment: C: Why DESeq2 filter and remove genes with high count?
... If removed genes have high counts in all samples what is your explanation? @WouterDeCoster ...
written 2.8 years ago by abc30
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
... Would you please explain more about how to prepare data? ...
written 2.8 years ago by abc30
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Comment: C: Motifs data base
... Thanks a lot for your information ...
written 3.2 years ago by abc30
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Comment: C: Motifs data base
... Thanks a lot for your information ...
written 3.2 years ago by abc30
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Motifs data base
... I have found some motifs using DREME. Is there any database to check whether these motifs report before in specific sequence or region? Thanks ...
dreme motifs rna-seq dna written 3.2 years ago by abc30 • updated 3.2 years ago by Girolamo140
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Comment: C: Co-variants in differential expression analysis
... Thanks in advance for the nice point ...
written 3.2 years ago by abc30
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Comment: C: Co-variants in differential expression analysis
... Yes I have read them. But I am not sure, how to define co-variants! do have any example? ...
written 3.2 years ago by abc30

Latest awards to abc

Great Question 5 months ago, created a question with more than 5,000 views. For how to download gene annotation bed file from ensembl?
Great Question 2.6 years ago, created a question with more than 5,000 views. For Bed to BedGraph
Popular Question 2.6 years ago, created a question with more than 1,000 views. For bigwig file in UCSC custom track
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to get sequence using masked repeats?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Pathway analysis using R
Popular Question 2.6 years ago, created a question with more than 1,000 views. For how to download gene annotation bed file from ensembl?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to download intronic positions from Ensembl
Popular Question 2.6 years ago, created a question with more than 1,000 views. For How to annotate positions using biomaRt R package?
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Convert ensembl gene ID
Popular Question 2.6 years ago, created a question with more than 1,000 views. For Bed to BedGraph

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