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Comment: C: Bam output of deduplication using UMItools
3.7 years ago by Ati ▴ 40
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3
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1.2k
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Bam output of deduplication using UMItools
flagstat samtools RNA-seq UMItools bam dedup
updated 6 months ago by 40k • written 3.7 years ago by ▴ 40
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871
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Comment: C: High number of reads with the incorrect strand designation.
3.7 years ago by Ati ▴ 40
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0
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967
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Comment: C: memory problem runnig multiqc --interactive
3.7 years ago by Ati ▴ 40
0
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2
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967
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memory problem runnig multiqc --interactive
RNA-Seq multiqc
updated 3.7 years ago by 134k • written 3.7 years ago by ▴ 40
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1
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871
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Comment: C: High number of reads with the incorrect strand designation.
3.7 years ago by Ati ▴ 40
0
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0
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871
views
Comment: C: High number of reads with the incorrect strand designation.
3.7 years ago by Ati ▴ 40
3
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7
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871
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High number of reads with the incorrect strand designation.
picard CollectRnaSeqMetrics RNA-Seq rna-seq Picard
3.7 years ago by Ati ▴ 40
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0
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2.0k
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Comment: C: Deduplication using UMItools
3.7 years ago by Ati ▴ 40
0
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1
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2.0k
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Comment: C: Deduplication using UMItools
3.7 years ago by Ati ▴ 40
1
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4
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2.0k
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Deduplication using UMItools
RNA-Seq bam umitools duplication Picard
updated 3.7 years ago by 103k • written 3.7 years ago by ▴ 40
0
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1
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971
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Answer: A: Create txt file in a for loop
updated 3.7 years ago by 40k • written 3.7 years ago by ▴ 40
1
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15
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971
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Create txt file in a for loop
bash loop linux
updated 3.7 years ago by ▴ 140 • written 3.7 years ago by ▴ 40
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0
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971
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Comment: C: Create txt file in a for loop
3.7 years ago by Ati ▴ 40
2
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1
reply
1.1k
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UMI on the fastq header
UMI RNA-Seq umi-tools fastq illumina
3.8 years ago by Ati ▴ 40
0
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1
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2.2k
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Comment: C: How to calculate the shortest path between each pairs of genes in WGCNA
4.6 years ago by Ati ▴ 40
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3
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2.2k
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How to calculate the shortest path between each pairs of genes in WGCNA
wgcna R gene co-expression analysis
updated 4.6 years ago by 8.3k • written 4.6 years ago by ▴ 40
3
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10
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3.6k
views
How to annotate positions using biomaRt R package?
r biomart
updated 5 months ago by 40k • written 7.6 years ago by ▴ 40
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0
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3.6k
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Comment: C: How to annotate positions using biomaRt R package?
updated 5.0 years ago by 40k • written 7.6 years ago by ▴ 40
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0
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1.7k
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Answer: A: How should I define contrast with more than 2 levels in DESeq2 ?
6.9 years ago by Ati ▴ 40
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1
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2.5k
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Comment: C: Why DESeq2 filter and remove genes with high count?
7.0 years ago by Ati ▴ 40
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0
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12k
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Comment: C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
7.1 years ago by Ati ▴ 40
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0
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1.7k
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Comment: C: Motifs data base
7.4 years ago by Ati ▴ 40
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0
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1.7k
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Comment: C: Motifs data base
7.4 years ago by Ati ▴ 40
3
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4
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1.7k
views
Motifs data base
RNA-Seq Motifs DNA DREME
updated 7.4 years ago by ▴ 140 • written 7.4 years ago by ▴ 40
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0
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1.6k
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Comment: C: Co-variants in differential expression analysis
7.4 years ago by Ati ▴ 40
2
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6
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1.6k
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Co-variants in differential expression analysis
RNA-Seq sequencing DE edgeR Voom
7.4 years ago by Ati ▴ 40
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2
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1.6k
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Comment: C: Co-variants in differential expression analysis
7.4 years ago by Ati ▴ 40
0
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1
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2.2k
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Comment: C: bigwig file in UCSC custom track
7.4 years ago by Ati ▴ 40
1
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3
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2.2k
views
bigwig file in UCSC custom track
UCSC bigwig RNA-Seq sequencing
updated 7.4 years ago by 11k • written 7.4 years ago by ▴ 40
0
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3
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1.5k
views
How to interprate edgeR result for different comparison
RNA-Seq edgeR R next-gen
updated 7.5 years ago by 5.7k • written 7.5 years ago by ▴ 40
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0
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1.5k
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Comment: C: How to interprate edgeR result for different comparison
7.5 years ago by Ati ▴ 40
0
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0
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2.5k
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Comment: C: Pathway analysis using R
7.5 years ago by Ati ▴ 40
0
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0
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1.9k
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Comment: C: How to get sequence using masked repeats?
7.5 years ago by Ati ▴ 40
2
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4
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1.9k
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How to get sequence using masked repeats?
UCSC sequence
7.5 years ago by Ati ▴ 40
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0
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1.9k
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Comment: C: How to get sequence using masked repeats?
7.5 years ago by Ati ▴ 40
1
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2
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2.5k
views
Pathway analysis using R
RNA-Seq R
updated 7.5 years ago by ★ 5.2k • written 7.5 years ago by ▴ 40
1
vote
2
replies
2.8k
views
Convert ensembl gene ID
RNA-Seq Ensembl
updated 14 months ago by 40k • written 7.6 years ago by ▴ 40
0
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1
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3.6k
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Comment: C: How to annotate positions using biomaRt R package?
7.6 years ago by Ati ▴ 40
0
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0
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3.6k
views
Comment: C: How to annotate positions using biomaRt R package?
7.6 years ago by Ati ▴ 40
0
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1
reply
3.6k
views
Comment: C: How to annotate positions using biomaRt R package?
7.6 years ago by Ati ▴ 40
0
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0
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3.6k
views
Comment: C: How to annotate positions using biomaRt R package?
7.6 years ago by Ati ▴ 40
0
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0
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20k
views
Comment: Comment: Bed to BedGraph
updated 14 months ago by 40k • written 7.6 years ago by ▴ 40
0
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1
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20k
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Comment: Comment: Bed to BedGraph
updated 14 months ago by 40k • written 7.6 years ago by ▴ 40
0
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1
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20k
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Comment: C: Bed to BedGraph
7.6 years ago by Ati ▴ 40
9
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7
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20k
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Bed to BedGraph
RNA-Seq DaPars bedgraph bed
updated 14 months ago by 40k • written 7.6 years ago by ▴ 40
2
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1
reply
11k
views
how to download gene annotation bed file from ensembl?
ensembl RNA-Seq genome ucsc
updated 5 months ago by 40k • written 7.7 years ago by ▴ 40
5
votes
4
replies
4.1k
views
How to download intronic positions from Ensembl
genome ensembl
updated 7.7 years ago by ★ 1.2k • written 7.7 years ago by ▴ 40
0
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0
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4.1k
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Comment: C: How to download intronic positions from Ensembl
7.7 years ago by Ati ▴ 40
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