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0
votes
1
reply
1.5k
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Comment:
C: Bam output of deduplication using UMItools
4.9 years ago by
Ati
▴ 50
0
votes
3
replies
1.5k
views
Bam output of deduplication using UMItools
flagstat
samtools
RNA-seq
UMItools
bam
dedup
updated 21 months ago by
Ram
44k • written 4.9 years ago by
Ati
▴ 50
0
votes
0
replies
1.3k
views
Comment:
C: High number of reads with the incorrect strand designation.
4.9 years ago by
Ati
▴ 50
0
votes
0
replies
1.2k
views
Comment:
C: memory problem runnig multiqc --interactive
4.9 years ago by
Ati
▴ 50
0
votes
2
replies
1.2k
views
memory problem runnig multiqc --interactive
RNA-Seq
multiqc
updated 4.9 years ago by
GenoMax
148k • written 4.9 years ago by
Ati
▴ 50
0
votes
1
reply
1.3k
views
Comment:
C: High number of reads with the incorrect strand designation.
4.9 years ago by
Ati
▴ 50
0
votes
0
replies
1.3k
views
Comment:
C: High number of reads with the incorrect strand designation.
4.9 years ago by
Ati
▴ 50
4
votes
7
replies
1.3k
views
High number of reads with the incorrect strand designation.
picard
CollectRnaSeqMetrics
RNA-Seq
rna-seq
Picard
4.9 years ago by
Ati
▴ 50
0
votes
0
replies
2.6k
views
Comment:
C: Deduplication using UMItools
4.9 years ago by
Ati
▴ 50
0
votes
1
reply
2.6k
views
Comment:
C: Deduplication using UMItools
4.9 years ago by
Ati
▴ 50
1
vote
4
replies
2.6k
views
Deduplication using UMItools
RNA-Seq
bam
umitools
duplication
Picard
updated 4.9 years ago by
Devon Ryan
104k • written 4.9 years ago by
Ati
▴ 50
0
votes
1
reply
1.5k
views
Answer:
A: Create txt file in a for loop
updated 4.9 years ago by
Ram
44k • written 4.9 years ago by
Ati
▴ 50
1
vote
15
replies
1.5k
views
Create txt file in a for loop
bash
loop
linux
updated 4.9 years ago by
padwalmk
▴ 140 • written 4.9 years ago by
Ati
▴ 50
0
votes
0
replies
1.5k
views
Comment:
C: Create txt file in a for loop
4.9 years ago by
Ati
▴ 50
2
votes
1
reply
1.4k
views
UMI on the fastq header
UMI
RNA-Seq
umi-tools
fastq
illumina
5.0 years ago by
Ati
▴ 50
0
votes
1
reply
2.7k
views
Comment:
C: How to calculate the shortest path between each pairs of genes in WGCNA
5.8 years ago by
Ati
▴ 50
0
votes
3
replies
2.7k
views
How to calculate the shortest path between each pairs of genes in WGCNA
wgcna
R
gene co-expression analysis
updated 5.8 years ago by
Benn
8.3k • written 5.8 years ago by
Ati
▴ 50
3
votes
10
replies
4.2k
views
How to annotate positions using biomaRt R package?
r
biomart
updated 20 months ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
0
votes
0
replies
4.2k
views
Comment:
C: How to annotate positions using biomaRt R package?
updated 6.2 years ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
0
votes
0
replies
2.0k
views
Answer:
A: How should I define contrast with more than 2 levels in DESeq2 ?
8.0 years ago by
Ati
▴ 50
0
votes
1
reply
2.7k
views
Comment:
C: Why DESeq2 filter and remove genes with high count?
8.2 years ago by
Ati
▴ 50
0
votes
0
replies
13k
views
Comment:
C: Best Way To Quantify Influence Of Different Covariates On Gene Expression?
8.2 years ago by
Ati
▴ 50
0
votes
0
replies
2.0k
views
Comment:
C: Motifs data base
8.6 years ago by
Ati
▴ 50
0
votes
0
replies
2.0k
views
Comment:
C: Motifs data base
8.6 years ago by
Ati
▴ 50
3
votes
4
replies
2.0k
views
Motifs data base
RNA-Seq
Motifs
DNA
DREME
updated 8.6 years ago by
Girolamo
▴ 140 • written 8.6 years ago by
Ati
▴ 50
0
votes
0
replies
2.0k
views
Comment:
C: Co-variants in differential expression analysis
8.6 years ago by
Ati
▴ 50
2
votes
6
replies
2.0k
views
Co-variants in differential expression analysis
RNA-Seq
sequencing
DE
edgeR
Voom
8.6 years ago by
Ati
▴ 50
0
votes
2
replies
2.0k
views
Comment:
C: Co-variants in differential expression analysis
8.6 years ago by
Ati
▴ 50
0
votes
1
reply
2.5k
views
Comment:
C: bigwig file in UCSC custom track
8.6 years ago by
Ati
▴ 50
1
vote
3
replies
2.5k
views
bigwig file in UCSC custom track
UCSC
bigwig
RNA-Seq
sequencing
updated 8.6 years ago by
Sukhi Singh
11k • written 8.6 years ago by
Ati
▴ 50
0
votes
3
replies
1.7k
views
How to interprate edgeR result for different comparison
RNA-Seq
edgeR
R
next-gen
updated 8.7 years ago by
russhh
5.7k • written 8.7 years ago by
Ati
▴ 50
0
votes
0
replies
1.7k
views
Comment:
C: How to interprate edgeR result for different comparison
8.7 years ago by
Ati
▴ 50
0
votes
0
replies
2.7k
views
Comment:
C: Pathway analysis using R
8.7 years ago by
Ati
▴ 50
0
votes
0
replies
2.2k
views
Comment:
C: How to get sequence using masked repeats?
8.7 years ago by
Ati
▴ 50
2
votes
4
replies
2.2k
views
How to get sequence using masked repeats?
UCSC
sequence
8.7 years ago by
Ati
▴ 50
0
votes
0
replies
2.2k
views
Comment:
C: How to get sequence using masked repeats?
8.7 years ago by
Ati
▴ 50
1
vote
2
replies
2.7k
views
Pathway analysis using R
RNA-Seq
R
updated 8.7 years ago by
ivivek_ngs
★ 5.2k • written 8.7 years ago by
Ati
▴ 50
1
vote
2
replies
3.1k
views
Convert ensembl gene ID
RNA-Seq
Ensembl
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
0
votes
1
reply
4.2k
views
Comment:
C: How to annotate positions using biomaRt R package?
8.8 years ago by
Ati
▴ 50
0
votes
0
replies
4.2k
views
Comment:
C: How to annotate positions using biomaRt R package?
8.8 years ago by
Ati
▴ 50
0
votes
1
reply
4.2k
views
Comment:
C: How to annotate positions using biomaRt R package?
8.8 years ago by
Ati
▴ 50
0
votes
0
replies
4.2k
views
Comment:
C: How to annotate positions using biomaRt R package?
8.8 years ago by
Ati
▴ 50
0
votes
0
replies
23k
views
Comment:
Comment: Bed to BedGraph
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
0
votes
1
reply
23k
views
Comment:
Comment: Bed to BedGraph
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
0
votes
1
reply
23k
views
Comment:
C: Bed to BedGraph
8.8 years ago by
Ati
▴ 50
9
votes
7
replies
23k
views
Bed to BedGraph
RNA-Seq
DaPars
bedgraph
bed
updated 2.4 years ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
2
votes
1
reply
12k
views
how to download gene annotation bed file from ensembl?
ensembl
RNA-Seq
genome
ucsc
updated 20 months ago by
Ram
44k • written 8.8 years ago by
Ati
▴ 50
5
votes
4
replies
4.5k
views
How to download intronic positions from Ensembl
genome
ensembl
updated 8.9 years ago by
abascalfederico
★ 1.2k • written 8.9 years ago by
Ati
▴ 50
0
votes
0
replies
4.5k
views
Comment:
C: How to download intronic positions from Ensembl
8.9 years ago by
Ati
▴ 50
49 results • Page
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