Admin: Devon Ryan

gravatar for Devon Ryan
Devon Ryan60k
Reputation:
60,300
Status:
Trusted
Location:
Freiburg, Germany
Twitter:
dpryan79
Scholar ID:
Google Scholar Page
Last seen:
11 minutes ago
Joined:
3 years, 10 months ago
Email:
d*******@gmail.com

I'm currently a bioinformatician/data manager at the Max Planck Institute for Immunobiology and Epigenetics in Freiburg, Germany.

I was a post-doc at the DZNE in Bonn, Germany, spending much of my time working on epigenetics and NGS.

Posts by Devon Ryan

<prev • 7,273 results • page 1 of 728 • next >
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Comment: C: microRNA high-throughout sequencing analysis
... Technical replicates are largely useless. The question is whether you have biological replicates... ...
written 1 day ago by Devon Ryan60k
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Comment: C: Add GenomicRanges to SummarizedExperiment
... Then use that same accessor to replace it: rowRanges(RAW_DESeq2A) = proper_GRangesObject_or_GRangesList I presume that the GRangesList or GRanges object will need to be appropriately ordered. ...
written 2 days ago by Devon Ryan60k
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Comment: C: PCA Scatterplot matrices in R
... You can use `corMatrix` or something along those lines then. ...
written 2 days ago by Devon Ryan60k
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Comment: C: Add GenomicRanges to SummarizedExperiment
... Try the `rowRanges()` accessor. ...
written 3 days ago by Devon Ryan60k
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Answer: A: How to read in count data from matrix of read counts into Deseq2
... `countData = read.csv("transcript_count_matrix.csv")` or some variant of it. ...
written 3 days ago by Devon Ryan60k
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Comment: C: Add GenomicRanges to SummarizedExperiment
... The error is telling you to try `resGR <- results(RAW_DESeq2AF, lfcThreshold = 1, format = "GRangesList")`. ...
written 3 days ago by Devon Ryan60k
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Comment: C: Question: error in Limma analysis - estimated df (df.0) for prior value of varia
... You might post this to the bioconductor site (support.bioconductor.org), where Gordon Smyth (the limma author) will more quickly see it. ...
written 4 days ago by Devon Ryan60k
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Comment: C: PCA Scatterplot matrices in R
... A correlation of the eigenvectors? They're orthogonal... ...
written 4 days ago by Devon Ryan60k
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Comment: C: Tophat and Bowtie installed with Conda not working on test data.
... I've asked one of the bioconda core people to check into this. My update isn't even appearing yet under python 2.7! ...
written 4 days ago by Devon Ryan60k
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Comment: C: problem in extracting sequences
... I'm assuming that the person doesn't have a data frame that includes the sequences... ...
written 4 days ago by Devon Ryan60k

Latest awards to Devon Ryan

Teacher 3 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Teacher 4 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Teacher 6 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Appreciated 6 days ago, created a post with more than 5 votes. For BWA 0.7.11 is out, supports ALT contigs
Commentator 9 days ago, created a comment with at least 3 up-votes. For C: Will you critique/rate my mRNA seq alignment analysis?
Teacher 10 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Teacher 12 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Scholar 13 days ago, created an answer that has been accepted. For A: Group The Data In Python
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Commentator 13 days ago, created a comment with at least 3 up-votes. For C: Will you critique/rate my mRNA seq alignment analysis?
Teacher 13 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Scholar 13 days ago, created an answer that has been accepted. For A: Group The Data In Python
Teacher 14 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Commentator 17 days ago, created a comment with at least 3 up-votes. For C: Will you critique/rate my mRNA seq alignment analysis?
Scholar 17 days ago, created an answer that has been accepted. For A: Group The Data In Python
Teacher 17 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Good Answer 21 days ago, created an answer that was upvoted at least 5 times. For A: How to extract unique mapped results from Bowtie2 bam results?
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: Tophat Vs. Bowtie: Quality Scores
Teacher 27 days ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Scholar 5 weeks ago, created an answer that has been accepted. For A: Group The Data In Python
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: Tophat Vs. Bowtie: Quality Scores
Teacher 5 weeks ago, created an answer with at least 3 up-votes. For A: R: Merge Duplicates In Column In Data.Frame By Condition In Another Column
Appreciated 5 weeks ago, created a post with more than 5 votes. For BWA 0.7.11 is out, supports ALT contigs
Scholar 5 weeks ago, created an answer that has been accepted. For A: Group The Data In Python

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