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Comment: Comment: DESeq2 : parameter of Negative Binomial model in a context of gene expression
8 days ago by Devon Ryan 103k
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492
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Answer: Answer: No differentially expressed genes after multiple testing correction in mice
18 days ago by Devon Ryan 103k
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712
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Answer: Answer: Bioinformatics opportunities in Europe?
6 weeks ago by Devon Ryan 103k
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499
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Comment: Comment: How Wald test calculates p-values in DESeq2?
7 months ago by Devon Ryan 103k
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1
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11k
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Comment: Comment: Convert fastq.gz to fastq.bgz
7 months ago by Devon Ryan 103k
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340
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Comment: Comment: Why the number of genes decreased after dds (DESeqDataSetFromMatrix)?
8 months ago by Devon Ryan 103k
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1.1k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
8 months ago by Devon Ryan 103k
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1
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1.1k
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Comment: Comment: Come work with me! Bioinformatician - Boston MA
8 months ago by Devon Ryan 103k
7
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5
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1.1k
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Job: Come work with me! Bioinformatician - Boston MA
job
8 months ago by Devon Ryan 103k
2
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1
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355
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Answer: Answer: Do edger, limma and deseq2 can be used with datasets from UMIs
12 months ago by Devon Ryan 103k
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1
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439
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Comment: Comment: Calculate the ratio of H3K4me3 to H3K4me1 using output of deeptools computeMatri
13 months ago by Devon Ryan 103k
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0
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431
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Answer: Answer: Interpreting output produced by computeMatrix reference-point
13 months ago by Devon Ryan 103k
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1.2k
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Comment: Comment: Pool or not to pool
14 months ago by Devon Ryan 103k
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1.2k
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Comment: Comment: Pool or not to pool
14 months ago by Devon Ryan 103k
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1
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1.2k
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Comment: Comment: Pool or not to pool
14 months ago by Devon Ryan 103k
1
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1
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951
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Comment: Comment: BAM > featurecount > DEseq2 Nextflow/Snakemake pipeline
14 months ago by Devon Ryan 103k
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2.1k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
14 months ago by Devon Ryan 103k
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2
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2.1k
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Comment: Comment: Why piping a conda command into bash doesn't work ?
14 months ago by Devon Ryan 103k
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1.7k
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Comment: Comment: Extracting Methylation Data
15 months ago by Devon Ryan 103k
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1.9k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
16 months ago by Devon Ryan 103k
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0
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523
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Comment: Comment: bisulfite methylation alignment rate
16 months ago by Devon Ryan 103k
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0
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8.9k
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Comment: Comment: DESeq2 modelling and Wald's test
16 months ago by Devon Ryan 103k
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1
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1.9k
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Comment: Comment: Unexpected Bowtie2 behavior with --phred64 and --phred33 flags
16 months ago by Devon Ryan 103k
2
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1
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1.9k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
16 months ago by Devon Ryan 103k
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1
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523
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Comment: Comment: bisulfite methylation alignment rate
16 months ago by Devon Ryan 103k
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3.1k
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Comment: Comment: HIsat2 bam and summary output - multiple output file type
16 months ago by Devon Ryan 103k
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1.9k
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Comment: Comment: normalization for unsupervised analysis by DESeq2
16 months ago by Devon Ryan 103k
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8.0k
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Comment: Comment: featureCounts isoform vs gene summarization
16 months ago by Devon Ryan 103k
2
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0
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482
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Answer: Answer: deeptools plotprofile TSS and TES are very close
16 months ago by Devon Ryan 103k
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0
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1.3k
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Comment: Comment: delete a file
16 months ago by Devon Ryan 103k
2
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0
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554
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Answer: Answer: multiBamSummary for unpaired end read?
17 months ago by Devon Ryan 103k
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1
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951
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Answer: Answer: Log2 Scale Deeptools
18 months ago by Devon Ryan 103k
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0
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951
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Comment: Comment: Log2 Scale Deeptools
18 months ago by Devon Ryan 103k
3
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1
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879
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Answer: Answer: Errors when ajusting pvalue on R
18 months ago by Devon Ryan 103k
2
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0
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806
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Answer: Answer: Normalizing BAM Files
18 months ago by Devon Ryan 103k
1
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0
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950
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Answer: Answer: deeptools reference-point center
18 months ago by Devon Ryan 103k
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1
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1.2k
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Comment: Comment: ? in cram files
19 months ago by Devon Ryan 103k
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1
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1.2k
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Answer: Answer: ? in cram files
19 months ago by Devon Ryan 103k
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0
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1.3k
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Comment: Comment: Singularity container for deepTools?
19 months ago by Devon Ryan 103k
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0
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1.4k
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Comment: Comment: Kmergenie module readfq not found
20 months ago by Devon Ryan 103k
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0
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1.0k
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Comment: Comment: DESeq2 Not full Rank - Age & Medication
20 months ago by Devon Ryan 103k
2
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1
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1.0k
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Comment: Comment: DESeq2 Not full Rank - Age & Medication
20 months ago by Devon Ryan 103k
1
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0
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930
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Comment: Comment: Bedfile format deeptools
21 months ago by Devon Ryan 103k
1
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2
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930
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Answer: Answer: Bedfile format deeptools
21 months ago by Devon Ryan 103k
0
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1
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634
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Comment: Comment: Methylome Data or DE Analysis
22 months ago by Devon Ryan 103k
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0
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1.2k
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Comment: Comment: Inserting Gaps into FASTA files for Alignment to Reference
22 months ago by Devon Ryan 103k
1
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0
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3.7k
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Comment: Comment: GC content in bilsulfite converted library
22 months ago by Devon Ryan 103k
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1
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10k
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Comment: Comment: ViennaRNA error: ImportError: No module named _RNA
22 months ago by Devon Ryan 103k
3
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0
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874
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Comment: Comment: Using RefSeq gene annotation file to determine gene lengths
23 months ago by Devon Ryan 103k
4
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1
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808
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Comment: Comment: Bioinformatics Definitions
23 months ago by Devon Ryan 103k
10,040 results • Page 1 of 201
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