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• Gene Ontology: Shortest Path From Root To Node
  Given some GO BP terms for a gene I wish to find out, which of the terms has more specific meanin...
• Shortest way between Protein and Pathway?
  Hello I'm looking for a tool that can give me the shortest path between a protein and a certain p...
• Compute Distance Between The Two Sets Of Disease Associated Genes On Protein-Protein Interaction Network
  I am looking for a way to compare entire subnetworks within the context of encompassing PPI, say ...
• Shortest path algorithm in pathway studio
  Hi all, I used pathway studio to construct a biological pathway of some selected DEG obtained fr...
• WGCNA module consensus
  Hi I am using WGCNA to create a consensus network from 4 different gene expression data sets. I w...
• Graph Centrality measure
  I had read a paper of "Characterization of protein-interaction networks in tumors", In table of g...
• How Do You Align Or Compare Two Networks Content-Wise?
  Hello BioStars Imagine the following scenario: you have a few networks of connected genes. Let's...
• Merging And De-Duplicating Structural Variant Calls (Bedpe)
  I am looking for code/tools to merge and de-duplicate long lists of structural variants calls in ...
• How to get max out of Cytoscape Visualization
  Hi, So I was able to generate networks based on existing data sets and visualize them through Cy...
• How to highlight path between two nodes on cytoscape
  I am using Cytoscape 3.1 to display protein-protein interaction network. I imported the network f...
• Utility To Find The Shortest Distance (Publication-Wise) Between Two Bioinformaticians?
  Not bioinformatics in itself, but I am running increasingly often to find the shortest path betwe...
• WGCNA analysis in normal and tumor case
  Hi I want to perform WGCNA analysis, i am having RNA seq data (gene expression) in normal and tu...
• WGCNA TOM file
  Hi All, I am using WGCNA build a coexpression network. Here is the thing: I use `blockwiseModules...
• How to get correlation coefficient value between the genes in the WGCNA module network?
  Hello, With my dataset 88 tumor and 70 normal samples with 30k protein coding genes and lncRNAs....
• RNA Seq data for WGCNA
  Hi, I am trying to find correlation between genes and fold change values of RNA seq data, using ...
• WGCNA: Output gene lists from consensus network modules
  I am using WGCNA to create a consensus network from two different gene expression data sets. I wa...
• How Connected Are Researchers In Pubmed?
  Has anyone ever tried out the Oracle at Bacon? http://oracleofbacon.org/ So you put in two names...