CNVkit plotting tumor + healthy individuals
1
0
Entering edit mode
8.2 years ago
bitpir ▴ 240

Hi, I was just wondering if there's any way to plot a heatmap of all affected/tumor samples + the normal samples together? I think the default is set to plot the affected samples only.. Thanks!

CNVkit software • 1.4k views
ADD COMMENT
2
Entering edit mode
7.4 years ago
Eric T. ★ 2.8k

Sorry I missed this. The heatmap command will plot any .cns or .cnr files you give it, so to show normal samples, give it the normal samples' .cns or .cnr files. If those don't exist yet (e.g. via batch), you can create them using the fix and segment commands.

ADD COMMENT

Login before adding your answer.

Traffic: 2875 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6