Question: Highlighter Plot in R
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gravatar for matthew.m.hernandez
3.4 years ago by
matthew.m.hernandez30 wrote:

Hi everyone,

I am trying to figure out if there is any available R method (or other alignment software) to create a clean visualization of a nucleotide alignment such as the one attached. Specifically, I have an alignment of nucleotide sequences in fasta file format and would like to portray the alignment where mismatches and specific mutational signatures are highlighted (i.e. G to A). I am currently using the website http://www.hiv.lanl.gov/cgi-bin/HIGHLIGHT/HIGHLIGHT_XYPLOT/highlight1.cgi to do this but there are limitations and I am hoping for more control over variables such as sizing of the text, mismatch bars, colors, etc.

Any help or comments are always appreciated.

Thanks,

Matt

enter image description here

ADD COMMENTlink modified 3.4 years ago • written 3.4 years ago by matthew.m.hernandez30
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