Question: Highlighter Plot in R
gravatar for matthew.m.hernandez
3.9 years ago by
matthew.m.hernandez30 wrote:

Hi everyone,

I am trying to figure out if there is any available R method (or other alignment software) to create a clean visualization of a nucleotide alignment such as the one attached. Specifically, I have an alignment of nucleotide sequences in fasta file format and would like to portray the alignment where mismatches and specific mutational signatures are highlighted (i.e. G to A). I am currently using the website to do this but there are limitations and I am hoping for more control over variables such as sizing of the text, mismatch bars, colors, etc.

Any help or comments are always appreciated.



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ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by matthew.m.hernandez30
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