My server was recently updated to R 3.3 and I have a problem installing and running DEXSeq. Can someone help? Bioconductor installer states I am using bioc, version 3.2. Maybe I am doing some obvious mistake. Thanks !
Here is the Error:
source("https://bioconductor.org/biocLite.R") biocLite("DEXSeq",lib="~/R/x86_64-pc-linux-gnu-library/") BioC_mirror: https://bioconductor.org Using Bioconductor 3.2 (BiocInstaller 1.20.3), R 3.3.0 (2016-05-03). Installing package(s) ‘DEXSeq’ trying URL 'https://bioconductor.org/packages/3.2/bioc/src/contrib/DEXSeq_1.16.10.tar.gz' Content type 'unknown' length 370326 bytes (361 KB) ================================================== downloaded 361 KB * installing *source* package ‘DEXSeq’ ... ** R ** inst ** preparing package for lazy loading Error in makePrototypeFromClassDef(properties, ClassDef, immediate, where) : in making the prototype for class “DEXSeqDataSet” elements of the prototype failed to match the corresponding slot class: design (class "formula" ) Error : unable to load R code in package ‘DEXSeq’ ERROR: lazy loading failed for package ‘DEXSeq’ * removing ‘/homes2/marek/R/x86_64-pc-linux-gnu-library/DEXSeq’
R version 3.3.0 (2016-05-03) Platform: x86_64-pc-linux-gnu (64-bit) Running under: Ubuntu 14.04.4 LTS locale:  LC_CTYPE=en_US.UTF-8 LC_NUMERIC=C  LC_TIME=en_US.UTF-8 LC_COLLATE=en_US.UTF-8  LC_MONETARY=en_US.UTF-8 LC_MESSAGES=en_US.UTF-8  LC_PAPER=en_US.UTF-8 LC_NAME=C  LC_ADDRESS=C LC_TELEPHONE=C  LC_MEASUREMENT=en_US.UTF-8 LC_IDENTIFICATION=C attached base packages:  stats graphics grDevices utils datasets methods base other attached packages:  BiocInstaller_1.20.3 loaded via a namespace (and not attached):  tools_3.3.0