Question: How to download .GPL file from NCBI GEO Accession viewer
gravatar for christophe.morin
3.8 years ago by
christophe.morin10 wrote:

Hello there,

I'm currently working as an intern in bioinformatics and my task is to build a script that can convert any ChIP-CHIP data from Saccharomyces cerevisiae data file into a bedgraph (UCSC) format for our lab to use internally.

I'm at a point where I have all my data files, but I need to extract extra data from GPL files.

Example of a web page that has all the info I need: GPL6649 .

I am copying all the rows from the viewer and pasting them in a .txt file that I'm importing in my working directory.

Is there a way, through Bash/Shell script or R, to download all the tables?

Please enlighten me,

A new bioinformatics student

ADD COMMENTlink modified 3.8 years ago • written 3.8 years ago by christophe.morin10
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1668 users visited in the last hour