I have a list of enhancer marks in terms of peaks file from chip-seq data (three column, chr, start, end) and run motif analysis using HOMER software (http://homer.salk.edu/homer/). It did gave few known and de novo enriched motifs. I want to identify the peaks which are enriched with these TFs motifs from the initial list of peaks.
Does anybody has ideas/suggestions to achieve this? Is it possible at all?