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• Genetic Map in HapMap based on which population?
  I need to get the genetic map position for some SNPs so I downloaded the HapMap genetic map file ...
• Where To Get The Genetic Map For The Composite Of Multiple Signals Test
  Hello all, So, I have been trying to implement the CMS code (http://www.broadinstitute.org/scien...
• Population-Scaled Recombination Rate
  Hi: I would really appreciate it if someone could clarify me what the population recombination r...
• What Is The Significance Of The Population-Specific Dbsnp132 Vcf Files?
  I am trying to screen my NGS variants against known variations. The dbSNP132 VCF files seem like...
• Phasing Genotypes With High Recombination Rates (Ld Decays At About 500 Bp Or Less)
  Dear Biostar folk! I am now facing an issue with phasing my genotypes. I have a population data ...
• How To Convert Hapmap Genotypes Data To Plink Ped&Map Format
  hello, everyone! recently, I want to do some study on LD relationship of SNPs on whole-genome sc...
• Using Ldhat To Estimate Effective Population Size
  Hi everyone: I am trying to use the LDhat package to estimate the population recombination rate ...
• what is the most complete vcf file of population allele frequencies that can be built/downloaded from public datasets?
  What is the most complete vcf file of population allele frequencies that can be built/downloaded ...
• Compute Genetic Map
  Dear all, I would like to get the position in cM for a set of SNPs (SNPs from 1000Genomes Projec...
• Mapping TE insertions to recombination rates?
  Hello, I am trying to examine a correlation between recombination rate and transposable element i...
• Recombination rates for phasing & imputation
  I am using LDHAT to calculate a population-specific recombination map. The output from LDHAT give...
• Obtain genotype data from Eurasian and HapMap populations
  I have seen this figure in a Nature Immunology paper. I was wondering where I can find the genoty...
• Centimorgan Values For Snps In Dbsnp132 And Higher?
  Hi all, I am interested in calculating the integrated haplotype score (iHS) for SNPs surrounding ...
• Which population should be chosen?
  Dear all, Fortunately, I've learned how to use available databases to choose the Tagging SNP...
• Estimate recombination rate from linkage map
  Hi Simple question but just want to clarify how to estimate recombination rate from a genetic l...
• Calculate size of recombination bins or haplotype blocks
  Hi, I am hoping someone can point me towards a program that can calculate recombination bin size...