I'm trying to run OMA on PBS with parallel jobs. To do this, I first ran OMA -c for completing the database conversion. Then, I submitted a PBS script specifying to run a job array of 32 tasks with the following line:
#PBS -t 1-32
The jobs fail with the following error message:
Error, (in ReadDb) Failed to mmap Pat index
I also tried to do the database conversion when running the parallelized jobs and I get errors like this example:
Pre-processing input (st=2, dftype=1, totc=18235392, i=14680064 area of error: "GMTPGGGHLEGECCDDAVYADRSAEISAWL\000\000\000\000\000\000\000\000\000\000\000\000\..." ^ error detected in position 14680065 Error, (in ReadDb) invalid character in input SEQ
This does not occur when running OMA -c first. Do you have any idea about what is wrong?
Thanks in advance!