Question: Running GlimmerHMM on multifasta file
gravatar for pbigbig
3.7 years ago by
United States
pbigbig200 wrote:

Hi all,

I have a draft genome of a teleoist fish, which is comprised of ~20k scaffolds in a single multifasta file. I intend to run GlimmerHMM for this multifasta file using zebrafish (related species) pretrained set. But after run complete, it only output gff annotation for the first scaffold in multifasta file. How can I obtain GlimmerHMM output for all scaffold? (I have considered the option of spliting this multifasta file and run GlimmerHMM one by one by looping command, but is there any other better solutions?)

Thank you very much in advance for your suggestion! Best regards.


gene prediction glimmerhmm • 1.2k views
ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by pbigbig200
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1657 users visited in the last hour