Question: (Closed) RNAseq reads mapped to the gene
0
gravatar for myprogramming2016
4.5 years ago by
myprogramming20160 wrote:

Hi,

I work on plant species. I have used STAR to map RNAseq reads and featureCounts to get expression values. I would like to counts the number of reads map to the genes and outside of genes. Is there any tool or script to get this estimate?

Thanks

rna-seq star featurecounts • 1.1k views
ADD COMMENTlink written 4.5 years ago by myprogramming20160

Hello myprogramming2016!

It appears that your post has been cross-posted to another site: https://support.bioconductor.org/p/83394/

This is typically not recommended as it runs the risk of annoying people in both communities.

ADD REPLYlink written 4.5 years ago by WouterDeCoster44k

I am sorry about that. I didn't know about this.

ADD REPLYlink written 4.5 years ago by myprogramming20160

Regarding asking questions on online fora the following paper is of interest: http://journals.plos.org/ploscompbiol/article?id=10.1371/journal.pcbi.1002202

Considering your question got a reply on the bioconductor forum I will close this thread.

ADD REPLYlink written 4.5 years ago by WouterDeCoster44k

Hello myprogramming2016!

We believe that this post does not fit the main topic of this site.

Answered on Bioconductor forum

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.

Cheers!

ADD REPLYlink written 4.5 years ago by WouterDeCoster44k
Please log in to add an answer.
The thread is closed. No new answers may be added.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1183 users visited in the last hour