When I load my data into Lositan, the loci plot at higher He than expected given the measures produced by Arlequin and Genepop. Does Lositan not plot the mean He for each loci, or is this another measure of He (an upper quartile or something)?
I checked another paper that provides a lositan output, as well as summary stats, and found the same result: (http://bmcevolbiol.biomedcentral.com/articles/10.1186/s12862-014-0276-y)
It is not the Genepop input file, I double checked it, and used it to get mean He using Genepop for my loci.
Is this some sort of flaw in the program? Any help would be greatly appreciated!