Question: identify associated genes with methylation bumps
0
gravatar for weixiaokuan
3.7 years ago by
weixiaokuan90
United States
weixiaokuan90 wrote:

Hi,

I have run through methylation array (illumina EPIC) pipeline using minfi or ChAMP. Now, I have obtained, DMP and DMR. I would like to annotate these locus, regions with gene information. For DMP, it's simple I just need to add gene info to each probe. However, for DMR, do you guys know a simple solution to identify all the associated genes with a DMR? I know I may write code to get those genes but if any package/function available, it will be very helpful. Thank you. -Xiaokuan

ADD COMMENTlink modified 3.7 years ago by igor9.6k • written 3.7 years ago by weixiaokuan90
2
gravatar for igor
3.7 years ago by
igor9.6k
United States
igor9.6k wrote:

There are a few packages available for annotation of regions, such as:

ADD COMMENTlink modified 3.7 years ago • written 3.7 years ago by igor9.6k

Thank you igor. I'll give them a try. -Xiaokuan

ADD REPLYlink written 3.7 years ago by weixiaokuan90
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