bam files how to select and export to fastq file reads that are mapped minimum 100 times on genome
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7.8 years ago
Chris ▴ 30

Hi, I would like to find a way and select reads and export them to fastq file that are mapped minimum 100 times to the reference genome. I was looking into samtools but I couldn't find a way to do it.

Any help is appreciated.

thank you so much for your help!

alignment bam RNA-Seq • 1.1k views
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