How to filter alignment columns that have less than a minimum number of species?
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8.3 years ago
RoryC ▴ 30

Hey,

Does anyone know of any software/scripts that can filter out or mask alignment columns that have less than a minimum number of species (say less than 3 species)? Ideally it would work on MAF, but multi-FASTA or PHYLIP etc. would be great as well!

Cheers, Rory

alignment genome • 1.0k views
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