CDS extraction from mRNA sequences

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9.3 years ago

chandrakant • 0

I have got 2 fasta files, One contains mRNA sequences and other contain amino acid sequences . I want to extract CDS from of the given genes. I have generated GFF file also but not able to extract CDS from there too.Please suggest !!

Thank you

alignment genome sequence • 2.6k views

ADD COMMENT • link 9.3 years ago by chandrakant • 0

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Hi, I guess transdecoder can help : http://transdecoder.github.io/

ADD REPLY • link 9.3 years ago by Farbod ★ 3.4k

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please check this out:

https://groups.google.com/forum/#!searchin/trinityrnaseq-users/CDS/trinityrnaseq-users/6cHqmFs0VCg/4kZoBRzyAQAJ

ADD REPLY • link 9.3 years ago by Farbod ★ 3.4k

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