User: Farbod

gravatar for Farbod
Farbod2.9k
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Montreal
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4 weeks ago
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1 year, 1 month ago
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s**********@yahoo.com

Hi, I love Biology and Genetics and I have done my PhD thesis on "sturgeon fish RNA-seq" as my MSc was in aquaculture. I am interested in miRNA and epigenetics, too. And having about 4 years of experience in the field of bioinformatics. 

Posts by Farbod

<prev • 493 results • page 1 of 50 • next >
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News: Free Nature-Webcast: Circulating Tumour Cells
... **Circulating Tumour Cells: Liquid biopsy by high-throughput, high-resolution imaging flow cytometry** Date: March 28, 2017 Time: 8am PDT / 11am EDT / 4pm BST / 5pm CEST **Price: FREE** **Speakers** ![enter image description here][1] Dr David Jamieson, Northern Institute for Cancer Research ...
news nature written 5 weeks ago by Farbod2.9k
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Comment: C: Ensembl in Google Summer of Code
... Emily_Ensembl, Hi Thanks for sharing this news. ~ Best ...
written 5 weeks ago by Farbod2.9k
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Comment: C: BeeDeeM: the bioinformatics databank manager system
... Dear Patrick, Hi Thank you for sharing this tool. ~ Best ...
written 5 weeks ago by Farbod2.9k
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Answer: A: RNA seq differential expression clustering tools
... Dear guillaume.rbt, Hi You can use many R packages for expression clustering, please have a look at: [Interactive Heatmap in R][1] or [Trinity Automatically Partitioning Genes into Expression Clusters][2] ~ Bon courage! [1]: http://www.sthda.com/english/wiki/static-and-interactive-heatmap-i ...
written 6 weeks ago by Farbod2.9k
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News: edX Bioinformatics: A series of credit-eligible courses recognized by industry
... ![enter image description here][1] [Bioinformatics][2] *Learn how to analyze biological big data to unlock the next big biotech discovery.* **Job Outlook** Bioinformatics Scientist is expected to grow rapidly in the next several years and have roughly 10,000 new job openings from 2014-2024 (O*Ne ...
alignment news online course edx proteins written 6 weeks ago by Farbod2.9k
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News: Genomics: Decoding the Universal Language of Life
... Dear Biostars, Hi There is a **new** course in [Coursera][1] about **"Genomics"** by **University of Illinois** at Urbana-Champaign. ![enter image description here][2] ~ Best [1]: https://www.coursera.org/learn/genomics-research/home/welcome [2]: https://d3njjcbhbojbot.cloudfront.net/api/ut ...
news online course coursera written 7 weeks ago by Farbod2.9k
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Comment: C: Fold Change accepts, FDR denies; which one to use ?
... Dear Devon Ryan, Hi and thank you. As an expert in this field, could you please mention a reference "paper" about this strategy (ignoring the FDR and using FC threshold) for me? ~ Best ...
written 10 weeks ago by Farbod2.9k
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Comment: C: Fold Change accepts, FDR denies; which one to use ?
... Dear WouterDeCoster, I am using the gonads of each gender. Trinity usually reports several isoforms for each gene. ...
written 10 weeks ago by Farbod2.9k
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Comment: C: Fold Change accept, FDR deny; which one to use ?
... 1- thank you for your complete explanation. I have 3 biological replication for males and 3 for females (So, 6 samples in total and I am comparing DEG between sexes). I have TMM values and Trinity have used it for matrix and heatmap creation. can I use the TMM values for my box-plot drawing ? t ...
written 10 weeks ago by Farbod2.9k
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Comment: C: Fold Change accept, FDR deny; which one to use ?
... Good question. ;-) In the gene level DEG analysis pipeline of Trinity, **FDR** for these 11 isoforms is **0.8** and the **log2FC** is **-0.6** toward the females (which **is not correct** because **(1)** most isoforms are up-regulated in males, **(2)** the other researches showed that this gene is ...
written 10 weeks ago by Farbod2.9k

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Scholar 6 weeks ago, created an answer that has been accepted. For A: mireap procedure short tutorial
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Scholar 6 months ago, created an answer that has been accepted. For A: mireap procedure short tutorial
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