User: Farbod
Farbod • 3.0k
- Reputation:
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- Location:
- Montreal
- Last seen:
- 2 days, 10 hours ago
- Joined:
- 1 year, 4 months ago
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Hi, I love Biology and Genetics and I have done my PhD thesis on "sturgeon fish RNA-seq" as my MSc was in aquaculture. I am interested in miRNA and epigenetics, too. And having about 4 years of experience in the field of bioinformatics.
Posts by Farbod
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... **Circulating Tumour Cells: Liquid biopsy by high-throughput, high-resolution imaging flow cytometry**
Date: March 28, 2017
Time: 8am PDT / 11am EDT / 4pm BST / 5pm CEST
**Price: FREE**
**Speakers**
![enter image description here][1]
Dr David Jamieson, Northern Institute for Cancer Research
...
written 4 months ago by
Farbod • 3.0k
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Comment:
C: Ensembl in Google Summer of Code
... Emily_Ensembl, Hi
Thanks for sharing this news.
~ Best ...
written 4 months ago by
Farbod • 3.0k
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... Dear Patrick, Hi
Thank you for sharing this tool.
~ Best ...
written 4 months ago by
Farbod • 3.0k
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... Dear guillaume.rbt, Hi
You can use many R packages for expression clustering, please have a look at:
[Interactive Heatmap in R][1]
or
[Trinity Automatically Partitioning Genes into Expression Clusters][2]
~ Bon courage!
[1]: http://www.sthda.com/english/wiki/static-and-interactive-heatmap-i ...
written 4 months ago by
Farbod • 3.0k
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... ![enter image description here][1]
[Bioinformatics][2]
*Learn how to analyze biological big data to unlock the next big biotech discovery.*
**Job Outlook**
Bioinformatics Scientist is expected to grow rapidly in the next several years and have roughly 10,000 new job openings from 2014-2024 (O*Ne ...
written 4 months ago by
Farbod • 3.0k
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... Dear Biostars, Hi
There is a **new** course in [Coursera][1] about **"Genomics"** by **University of Illinois** at Urbana-Champaign.
![enter image description here][2]
~ Best
[1]: https://www.coursera.org/learn/genomics-research/home/welcome
[2]: https://d3njjcbhbojbot.cloudfront.net/api/ut ...
written 4 months ago by
Farbod • 3.0k
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... Dear Devon Ryan, Hi and thank you.
As an expert in this field, could you please mention a reference "paper" about this strategy (ignoring the FDR and using FC threshold) for me?
~ Best ...
written 5 months ago by
Farbod • 3.0k
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... Dear WouterDeCoster,
I am using the gonads of each gender.
Trinity usually reports several isoforms for each gene. ...
written 5 months ago by
Farbod • 3.0k
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... 1- thank you for your complete explanation.
I have 3 biological replication for males and 3 for females (So, 6 samples in total and I am comparing DEG between sexes).
I have TMM values and Trinity have used it for matrix and heatmap creation. can I use the TMM values for my box-plot drawing ?
t ...
written 5 months ago by
Farbod • 3.0k
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... Good question. ;-)
In the gene level DEG analysis pipeline of Trinity, **FDR** for these 11 isoforms is **0.8** and the **log2FC** is **-0.6** toward the females (which **is not correct** because **(1)** most isoforms are up-regulated in males, **(2)** the other researches showed that this gene is ...
written 5 months ago by
Farbod • 3.0k
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