User: Farbod

gravatar for Farbod
Farbod3.0k
Reputation:
2,960
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Location:
Toronto
Last seen:
an hour ago
Joined:
1 year, 8 months ago
Email:
s**********@yahoo.com

Hi, I love Biology and Genetics and I have done my PhD thesis on "sturgeon fish RNA-seq" as my MSc was in aquaculture. I am interested in miRNA and epigenetics, too. And having about 4 years of experience in the field of bioinformatics. 

Posts by Farbod

<prev • 513 results • page 1 of 52 • next >
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Comment: C: Why "Motile sperm domain-containing protein 2" has nothing to do with "sperm"?
... Dear @cpad0112 Hi and Thanks. Can you clarify me that this gene has role in sperm swimming speed or not? what does having same/shared conserved domain mean here? ...
written 6 hours ago by Farbod3.0k
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Comment: C: Why "Motile sperm domain-containing protein 2" has nothing to do with "sperm"?
... Hi @genomax, and thanks. So are you agree that MOSPD2 has noting to do with sperm? ...
written 6 hours ago by Farbod3.0k
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Why "Motile sperm domain-containing protein 2" has nothing to do with "sperm"?
... Hi Biostars, (*maybe my question is more biological than bioinformatic, of course I have asked it in other website but I could not find the answer, yet. If it is "OFFTOPIC" please remove it*). **One** of my rna-seq sequences has annotated with "motile **sperm** domain-containing protein 2". I hav ...
gene annotation biology written 7 hours ago by Farbod3.0k • updated 4 hours ago by harold.smith.tarheel3.9k
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Comment: C: Is There A Biostar For Biology Questions?
... Hi, it seems that the first link does not work. ...
written 23 hours ago by Farbod3.0k
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Comment: C: Finding uncharacterized proteins in a specific pathway
... sorry, I assumed that @eimearrutherford has an unknown protein sequence and wants to examine its potential role in DNA damage response. ...
written 1 day ago by Farbod3.0k
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Comment: C: Two simillarly annotated sequence has no alignment similarity. Why?
... One other thing, teleost has experienced **Whole Genome Duplication** event (in salmonids it is even more than one WGD), does it has any effect on this situation? are we encountering paralogous genes or duplicated genes or some other evolutionary phenomenon instead of watching different parts of a ...
written 1 day ago by Farbod3.0k
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Comment: C: Finding uncharacterized proteins in a specific pathway
... No, not for "co-expression analysis", but as a beginning. I mean first collect a bunch of gene that are related to that pathway and make them blastable database and then blast (tblastx?) in order to identify some hit with the protein we are looking for. ...
written 1 day ago by Farbod3.0k
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Comment: C: Two simillarly annotated sequence has no alignment similarity. Why?
... I really appreciate that. ...
written 1 day ago by Farbod3.0k
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Comment: C: Finding uncharacterized proteins in a specific pathway
... @WouterDeCouster, Is it possible to extract the genes that has some GO term related to "DNA damage response", or even KEGG related to it (if any exist) and use them as the research database? ...
written 1 day ago by Farbod3.0k
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Comment: C: Two simillarly annotated sequence has no alignment similarity. Why?
... Thank you @WouterDeCoster, but how? translating the nucleotide in Expassy and align the proteins, for example? please help me and name some related tools for "looking more closely". ...
written 1 day ago by Farbod3.0k

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Student 5 months ago, asked a question with at least 3 up-votes. For DIAMOND blast imported into MEGAN6 has no taxonomic assignment
Scholar 8 months ago, created an answer that has been accepted. For A: mireap procedure short tutorial
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Scholar 13 months ago, created an answer that has been accepted. For A: mireap procedure short tutorial
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