Latest
Open
Jobs
Tutorials
Tags
About
FAQ
Community
Planet
New Post
Log In
New Post
Latest
Open
News
Jobs
Tutorials
Forum
Tags
Planet
Users
Log In
Sign Up
About
Profile
Posts
Awards
Show
all
questions
tools
blogs
news
tutorials
forum
answers
comments
1
vote
0
replies
1.2k
views
different transcripts show hits to same gene but in different species, what is it showing?
blast
alignment
gene
updated 5.2 years ago by
Biostar
20 • written 8.4 years ago by
Farbod
★ 3.4k
6
votes
13
replies
14k
views
Showing FDR and log2FC in Volcano plot using R
R
RNA-Seq
volcano plot
updated 5.5 years ago by
zx8754
12k • written 7.0 years ago by
Farbod
★ 3.4k
17
votes
27
replies
5.6k
views
How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
RNA-Seq
R
DEG
volcano plot
updated 5.5 years ago by
zx8754
12k • written 6.6 years ago by
Farbod
★ 3.4k
8
votes
6
replies
10k
views
How to just add some selected gene names to a volcano plot
R
ggplot2
volcano plot
updated 5.5 years ago by
zx8754
12k • written 6.6 years ago by
Farbod
★ 3.4k
5
votes
7
replies
2.0k
views
step by step BlastX against nr using Amazon cloud
blast
cloud
annotation
updated 5.7 years ago by
Abhishek
▴ 20 • written 7.1 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.5k
views
How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene
Cytoscape
network
updated 5.9 years ago by
xanderpico
▴ 580 • written 8.0 years ago by
Farbod
★ 3.4k
24
votes
21
replies
8.4k
views
9 follow
News:
Misunderstood parameter of NCBI BLAST
blast
alignment
updated 18 months ago by
Ram
44k • written 6.2 years ago by
Farbod
★ 3.4k
2
votes
8
replies
4.4k
views
What is the prefered script for HISAT2 genome-guided using draft genome? --dta or --exon ?
RNA-Seq
alignment
HISAT2
genome guided
6.4 years ago by
Farbod
★ 3.4k
0
votes
0
replies
4.4k
views
Comment:
C: What is the prefered script for HISAT2 genome-guided using draft genome? --dta,
6.4 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.4k
views
Comment:
C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.4 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.4k
views
Comment:
C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.4 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.4k
views
Comment:
C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
6.4 years ago by
Farbod
★ 3.4k
0
votes
0
replies
2.9k
views
Comment:
C: Adding tag XS to HISAT2 sam files perior to StringTie
6.4 years ago by
Farbod
★ 3.4k
0
votes
0
replies
2.8k
views
Comment:
C: bam file merge
6.4 years ago by
Farbod
★ 3.4k
2
votes
2
replies
2.9k
views
Adding tag XS to HISAT2 sam files perior to StringTie
RNA-Seq
alignment
hisat2
stringtie
samtools
updated 6.4 years ago by
lakhujanivijay
5.9k • written 6.4 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.7k
views
Comment:
C: Mapping paired-end reads to a draft genome using HISAT2
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.7k
views
Comment:
C: Mapping paired-end reads to a draft genome using HISAT2
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
4.7k
views
Comment:
C: Mapping paired-end reads to a draft genome using HISAT2
6.5 years ago by
Farbod
★ 3.4k
7
votes
7
replies
4.7k
views
Mapping paired-end reads to a draft genome using HISAT2
RNA-Seq
alignment
HISAT2
genome guided
updated 6.5 years ago by
GenoMax
148k • written 6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.0k
views
Comment:
C: Please suggest an appropriate genome-guided transcriptome assembler
6.5 years ago by
Farbod
★ 3.4k
8
votes
4
replies
2.1k
views
What is the recent preference for RNA-seq read deposition perior to publication
SRA
RNA-Seq
repository
FAIRsharing
updated 6.5 years ago by
i.sudbery
20k • written 6.5 years ago by
Farbod
★ 3.4k
2
votes
0
replies
1.7k
views
Comment:
C: 2-day WORKSHOP on SNAKEMAKE
6.5 years ago by
Farbod
★ 3.4k
0
votes
1
reply
10k
views
Comment:
C: How to just add some selected gene names to a volcano plot
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
10k
views
Comment:
C: How to just add some selected gene names to a volcano plot
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
21k
views
Comment:
C: Volcano plot help code
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
53k
views
Comment:
C: Gene Set Clustering based on Functional annotation (GeneSCF)
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
5.6k
views
Comment:
C: How to show both edgeR and deseq2 results in a volcano plot; highliting overlaps
6.6 years ago by
Farbod
★ 3.4k
2
votes
0
replies
5.2k
views
Comment:
C: how to map de novo assembly to reference genome ?
6.6 years ago by
Farbod
★ 3.4k
4
votes
5
replies
3.3k
views
running BUSCO on all isoforms or longest isoform per gene?
assembly
RNA-Seq
updated 6.6 years ago by
gilbert.bionet
▴ 160 • written 6.6 years ago by
Farbod
★ 3.4k
1
vote
1
reply
2.6k
views
How to perform univariate generalized linear models on RNA-seq data?
RNA-Seq
DEG
GLM
SARTools
updated 6.6 years ago by
h.mon
35k • written 6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
2.1k
views
Answer:
A: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
6.6 years ago by
Farbod
★ 3.4k
0
votes
4
replies
2.1k
views
SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
RNA-Seq
edgeR
DESeq2
SARTools
6.6 years ago by
Farbod
★ 3.4k
0
votes
0
replies
2.1k
views
Comment:
C: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
7.9k
views
Comment:
C: too few differentially expressed genes using each of DESeq2, edgeR and Limma-voo
6.6 years ago by
Farbod
★ 3.4k
0
votes
1
reply
3.3k
views
Comment:
C: running BUSCO on all isoforms or longest isoform per gene?
6.6 years ago by
Farbod
★ 3.4k
1
vote
0
replies
2.4k
views
Comment:
C: NGS data Analysis pipeline
6.6 years ago by
Farbod
★ 3.4k
583 results • Page
1 of 12
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6