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different transcripts show hits to same gene but in different species, what is it showing?
blast alignment gene
updated 3.7 years ago by 20 • written 6.9 years ago by ★ 3.4k
6
votes
13
replies
12k
views
Showing FDR and log2FC in Volcano plot using R
R RNA-Seq volcano plot
updated 4.0 years ago by 11k • written 5.5 years ago by ★ 3.4k
17
votes
27
replies
4.0k
views
How to show both edgeR and deseq2 results in a single volcano plot; highliting overlaps
RNA-Seq R DEG volcano plot
updated 4.0 years ago by 11k • written 5.1 years ago by ★ 3.4k
7
votes
6
replies
7.7k
views
How to just add some selected gene names to a volcano plot
R ggplot2 volcano plot
updated 4.0 years ago by 11k • written 5.1 years ago by ★ 3.4k
5
votes
7
replies
1.6k
views
step by step BlastX against nr using Amazon cloud
blast cloud annotation
updated 4.2 years ago by ▴ 20 • written 5.6 years ago by ★ 3.4k
0
votes
1
reply
3.1k
views
How to import a list of gene and visualize gene-gene interaction in Cytoscape zebrafish session
gene Cytoscape network
updated 4.4 years ago by ▴ 480 • written 6.5 years ago by ★ 3.4k
24
votes
21
replies
6.1k
views
9 follow
News: Misunderstood parameter of NCBI BLAST
blast alignment
updated 6 days ago by 39k • written 4.7 years ago by ★ 3.4k
2
votes
8
replies
3.5k
views
What is the prefered script for HISAT2 genome-guided using draft genome? --dta or --exon ?
RNA-Seq alignment HISAT2 genome guided
4.9 years ago by Farbod ★ 3.4k
0
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0
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3.5k
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Comment: C: What is the prefered script for HISAT2 genome-guided using draft genome? --dta,
4.9 years ago by Farbod ★ 3.4k
0
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1
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3.5k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
4.9 years ago by Farbod ★ 3.4k
0
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1
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3.5k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
4.9 years ago by Farbod ★ 3.4k
0
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1
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3.5k
views
Comment: C: What is the prefered script for HISAT2 genome-guided approach? --dta, --ss , --e
4.9 years ago by Farbod ★ 3.4k
0
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0
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2.3k
views
Comment: C: Adding tag XS to HISAT2 sam files perior to StringTie
4.9 years ago by Farbod ★ 3.4k
0
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0
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2.2k
views
Comment: C: bam file merge
4.9 years ago by Farbod ★ 3.4k
1
vote
2
replies
2.3k
views
Adding tag XS to HISAT2 sam files perior to StringTie
RNA-Seq alignment hisat2 stringtie samtools
updated 4.9 years ago by 5.7k • written 4.9 years ago by ★ 3.4k
0
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1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
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1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
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1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
3.8k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
4.9 years ago by Farbod ★ 3.4k
0
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1
reply
3.8k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
4.9 years ago by Farbod ★ 3.4k
0
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1
reply
3.8k
views
Comment: C: Mapping paired-end reads to a draft genome using HISAT2
4.9 years ago by Farbod ★ 3.4k
7
votes
7
replies
3.8k
views
Mapping paired-end reads to a draft genome using HISAT2
RNA-Seq alignment HISAT2 genome guided
updated 4.9 years ago by 129k • written 4.9 years ago by ★ 3.4k
0
votes
1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
0
votes
1
reply
2.0k
views
Comment: C: Please suggest an appropriate genome-guided transcriptome assembler
4.9 years ago by Farbod ★ 3.4k
8
votes
4
replies
1.7k
views
What is the recent preference for RNA-seq read deposition perior to publication
SRA RNA-Seq repository FAIRsharing
updated 5.0 years ago by 17k • written 5.0 years ago by ★ 3.4k
2
votes
0
replies
1.3k
views
Comment: C: 2-day WORKSHOP on SNAKEMAKE
5.0 years ago by Farbod ★ 3.4k
0
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1
reply
7.7k
views
Comment: C: How to just add some selected gene names to a volcano plot
5.1 years ago by Farbod ★ 3.4k
0
votes
0
replies
7.7k
views
Comment: C: How to just add some selected gene names to a volcano plot
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
17k
views
Comment: C: Volcano plot help code
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
45k
views
Comment: C: Gene Set Clustering based on Functional annotation (GeneSCF)
5.1 years ago by Farbod ★ 3.4k
0
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0
replies
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
0
replies
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
0
replies
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
0
replies
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a single volcano plot; highliting o
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
4.0k
views
Comment: C: How to show both edgeR and deseq2 results in a volcano plot; highliting overlaps
5.1 years ago by Farbod ★ 3.4k
2
votes
0
replies
4.5k
views
Comment: C: how to map de novo assembly to reference genome ?
5.1 years ago by Farbod ★ 3.4k
4
votes
5
replies
2.4k
views
running BUSCO on all isoforms or longest isoform per gene?
assembly RNA-Seq
updated 5.1 years ago by ▴ 160 • written 5.1 years ago by ★ 3.4k
1
vote
1
reply
2.1k
views
How to perform univariate generalized linear models on RNA-seq data?
RNA-Seq DEG GLM SARTools
updated 5.1 years ago by 34k • written 5.1 years ago by ★ 3.4k
0
votes
1
reply
1.6k
views
Answer: A: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
5.1 years ago by Farbod ★ 3.4k
0
votes
4
replies
1.6k
views
SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
RNA-Seq edgeR DESeq2 SARTools
5.1 years ago by Farbod ★ 3.4k
0
votes
0
replies
1.6k
views
Comment: C: SARTools instalation error: DESeq2 1.10.1 was found but >= 1.12.0 is required
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
5.5k
views
Comment: C: too few differentially expressed genes using each of DESeq2, edgeR and Limma-voo
5.1 years ago by Farbod ★ 3.4k
0
votes
1
reply
2.4k
views
Comment: C: running BUSCO on all isoforms or longest isoform per gene?
5.1 years ago by Farbod ★ 3.4k
1
vote
0
replies
2.0k
views
Comment: C: NGS data Analysis pipeline
5.1 years ago by Farbod ★ 3.4k
584 results • Page 1 of 12
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