Obtaining CDS and protein sequences from SNPEff

Question

[jsgounot]

Hi,

I used SNPEff to determine the impact of SNPs from vcf files and it worked well. However, I would like to obtain the complete coding and protein sequences of the different genes. I know the command dump from SNPEff but I wonder if there is a more easier way to obtain the differents sequences, since the generated output file seems to need a custom parser (I'm using python).

Thanks !