Question: Fst outlier test for pooled data
gravatar for AP
3.4 years ago by
AP90 wrote:

Hi all,

Is anyone aware of a empirical Fst outlier detection test for pooled data? I am not sure if the "regular" permutation, likelihood tests can be used for poolseq data since individual informations are not present.


fst poolseq • 1.3k views
ADD COMMENTlink modified 2.7 years ago • written 3.4 years ago by AP90
gravatar for AP
2.7 years ago by
AP90 wrote:

8 months later. Popoolation does the job of calculating Fst for you. One could remove outliers "by hand" by filtering the output file for Fst > 0.5 for instance.

ADD COMMENTlink written 2.7 years ago by AP90
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