Question: Finding diploid neanderthal alignment data, looking for ambiguity codes
gravatar for severalorks
3.1 years ago by
severalorks90 wrote:

I'm using Neanderthal alignment data from here:

Specifically, the .bam files. I would like to find alignments for neanderthal sequences to human genomes that state ambiguities (such as M or R). However, the data from that site does not have the ambiguities. Is there a way to find such information? Or are there no ambiguity codes in neanderthal alignments?

My goal is to compare diploid neanderthal sequences to diploid human sequences. How do researchers typically deal with this given the limited data they have for neanderthals?

ADD COMMENTlink written 3.1 years ago by severalorks90
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1101 users visited in the last hour