Question: Correlation between expressions of two isoforms
0
gravatar for ArseniyBykov
2.7 years ago by
ArseniyBykov0 wrote:

Dear collegues, I have a list of pairs of gene and its mereged isoform, like TMEFF1 and MSANDT3-TMEFF1, MRPS24 and URGCP-MRPS24. I need to mesure a correlation between expression of merged isoform and expression of downstream(one of two included in merged isoform) gene. I will utilize publically available rna-seq datasbases, however have no ideas how to calculate in these way.

rna-seq genome gene • 734 views
ADD COMMENTlink modified 2.7 years ago by Satyajeet Khare1.3k • written 2.7 years ago by ArseniyBykov0
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gravatar for Satyajeet Khare
2.7 years ago by
Satyajeet Khare1.3k
Pune, India
Satyajeet Khare1.3k wrote:

Cufflinks should be able to assemble these isoforms and quantitate them for you. You should be able to plot expression of these isoforms in two different samples using cummeRbund.

ADD COMMENTlink written 2.7 years ago by Satyajeet Khare1.3k
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