Question: ChIP peak data set comparison
0
gravatar for s.singh
4.5 years ago by
s.singh30
University of California, United States
s.singh30 wrote:

Hi all,

I am fairly new to coding and am trying to work through the ChIPSeeker package using my own data in R. I am not sure how to input multiple files (.bed) into the getTagMatrix command. I want to generate profiles of ChIP peaks among different experiments. I want to compare ChIP peaks of two different experiment.

Can someone give me any advice?

Thanks Swadha

chip-seq chipseekar • 1.4k views
ADD COMMENTlink modified 4.5 years ago by pariksheet.nanda80 • written 4.5 years ago by s.singh30
2
gravatar for pariksheet.nanda
4.5 years ago by
pariksheet.nanda80 wrote:

Read in the .bed files using the import.bed() function of the rtracklayer bioconductor package. import.bed() returns a GRanges object which getTagMatrix() accepts.

ADD COMMENTlink written 4.5 years ago by pariksheet.nanda80
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