multiple trees returned from BEAST2
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5.4 years ago
hdy ▴ 160

I have my sequences aligned and put it into beast 2 to get phylogenetic tree. But the returned NEXUS tree file contains so many trees (~10k). What should I do? Are those trees equally good? I have already used MCMC to be 1 million. Should I just increase the MCMC chain length or should I run other program and get a consensus tree?

phylogeny phylogenetic tree • 1.3k views
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