Question: Segmentation fault error while running extractPIRs from ShapeIT
gravatar for kirannbishwa01
2.9 years ago by
United States
kirannbishwa011.0k wrote:

I am getting 'segmentation fault error' while trying to run subcommand from ShapeIt

$extractPIRs --bam bamlist --vcf sequence.multiple.vcf.gz --out myPIRsList Reading genotypes in [sequence.multiple.vcf.gz] in VCF format Segmentation fault (core dumped)

This is just a test run using the example file that came with the program. Can't seem to find the cause of it.

Thanks much,

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