Dear all, I want to run kissDE R package on my set of SNPs, that I found using KisSplice software. I'm using this code:
snpB<-kissplice2counts("results_all_reads_mDr_all_reads_WW_k25_coherents_type_0a.fa", pairedEnd=FALSE) conditions<-c("mDr","WW") resB<-diffExpressedVariants(snpB, conditions, pvalue=1)
But it gives me the following error:
"Error in rowMeans(Y2[, idxA]): 'x' must be an array of at least two dimensions\n An error occured, unable to fit models on data".
Any suggestions will be appreciated.