How many CEL files in Connectivity Map O2
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Entering edit mode
7.6 years ago

Hello,

Current, I am learning the cMAP and want to download the CEL raw files (http://www.connectivitymap.org/cmap/cel_file_chunks.jsp).

When I finished the downloading and uncompressed them, I found that there are 1,000 CEL files, not 7,056 CEL files as shown in some papers (Drug-set enrichment analysis: a novel tool to investigate drug mode of action) or website (http://girke.bioinformatics.ucr.edu/longevityTools/mydoc/mydoc_longevityTools_eDRUG_04.html).

Can somebody tell me why? or I am wrong in somewhere.

Thanks,

Kevin

RNA-Seq genome Microarray connectivity map • 1.9k views
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Entering edit mode
7.6 years ago

Hi ssv.bio

Thanks for your reply.

It is my bad. I should uncompressed all files not just one as I did before wrongly.

Sorry for inconvenience.

Best,

Kevin

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Entering edit mode
7.6 years ago
ssv.bio ▴ 200

did you download all the chunks?

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