We have recently started to do a lot of (human) sequencing of all different kinds and one thing that has been particularly confusing is trying to understand all of the different versions of the different reference data sets (e.g. the reference genome, transcriptome, db_snp, COSMIC, etc.) that are out there, and along with that, finding a set of them that are all consistent with each other with respect to indexing, naming, and content, and thus will play nice when put into the same algorithm. Currently, I think that I can get a matching genome and transcriptome, etc. from ENSEMBL - and in particular, GRCh37.75, but I do not know which version of COSMIC, dnsnp, or other mutation lists (indels, etc.) should be paired with this. Thanks for the help.
(Note: other on this site have suggested delaying the move to GRCh38 - is that also agreed to be a good move?)