Hello, dear colleagues,
I need to extract the alignments of 5'UTR from multiple genome alignments in .msa format.My idea is too get the file containing mRNA\CDS coordinates and run through the .msa file and extract subalignments. The,I have a question. How can I get that file with mRNA coordinates in human genome? P.S. If there are any good ideas or other ways of extracting subalignments of 5'UTRs, I`d appreciate them!
Thanks in advance!