Question: Are GERP RS scores for a variant specific for the alternate allele or just the region?
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4.1 years ago by
anp375170 wrote:

I'm using Annovar, and from my understanding, GERP scores are meant for a position, not a specific allele. I want to define the GERP score field as region-based in Annovar.


Just gonna post here that every site has one individual GERP score, regardless of what nucleotide is present. But it still has to be defined as filter-based in Annovar for some reason.

annovar gerp rs • 1.4k views
ADD COMMENTlink modified 4.1 years ago • written 4.1 years ago by anp375170
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