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• CAF cells identification
  Hi, I have a dataset (from GEO) that includes the expression values of multiple tumor cells and n...
• Determining Which Genes Are Unexpressed In Cell Lines
  I would like to come up with a list of genes that are not expressed in certain cell lines (e.g. H...
• Deferentially expressed genes from FPKM values?
  Hi   I've a matrix for mouse genes with length and FPKM values from 4 different cell types. I w...
• alternative Pathway analysis
  I have a list of genes from a specific type of cells, Can I perform pathway analysis with any gen...
• question about mean of the squares of CNA values in scRNA-seq
  Hi, I am analyzing my scRNA-seq data derived from cancer patient samples. I am planning to follo...
• T Cell Specific Gene Expression Data
  I need to do some interaction studies with genes corresponding to T cell. Is there any database w...
• Subgrouping SIngle Cell in RNA-Seq Data Analysis
  Hello dear one, I have a single cell RNA seq data of 100 cells which express -marker A. I want t...
• What Is The Best Way To Get Gene Expression Depending On The Cell Type ?
  Hello all, I have a big gene list with genes not necessarily expressed in all cell types, so let...
• Sperm gene expression
  Hello. I wanted to know which gene are expressed in sperm cells . I checked databases but only ex...
• How to distinguish FPKM from TPM?
  Hi everyone, I have a table of gene expression levels of a single cell RNA-seq experiment and th...
• Dealing With Null Expression Values
  Hi there, This question might sound trivial but how do you deal with null gene expression values...
• How To Find Microarray Data Of Cancer Cell Lines Having Expression Of All Genes And Mirna?
  How can i find the microarray data of cancer cell line having expression of all genes and miRNA t...
• scRNA-seq, filter low expressed genes based on RPKM value
  Hi everyone! I analyze scRNA-seq data set from GEO, and it already comes in RPKM values for each...
• Best way to present the single cell RNA-seq data and bulk RNA-seq expression data together
  Hi, Do you have any ideas to better represent single cell RNA-seq data and bulk RNA-seq expressi...
• How to classify cells based on the expression of genes in scRNA-seq
  Hi, I am analyzing the scRNA-seq data for breast cancer. Here I want to classify the cells into ...
• How to distinguish malignant vs non-malignant cells based on gene expression data?
  Hi all, I have a data set of scRNA-seq of a tumor bulk which consists of malignant and non-malig...
• Should I remove zero-value from my single cell expression matrix before doing differential test?
  If I have an expression matrix with 2 conditions, A and B, and 30 cells in A condition, 40 cells ...
• QUESTION: define RNA expression level of some genes as traits for WGCNA?
  Hi, I am trying to perform WGCNA on a single-cell RNA-seq dataset. I want to find genes which ar...
• How to get the differentially expressed genes in cancer cell lines
  I'm wondering is there a way to calculate the differentially expressed genes in cancer cell lines...
• How to cluster single cell data using list of markers?
  Hi, I have a (single cell)) RNA Seq data of Marker X expressed by 100 cells and also I have mark...
• How can I identify cells from Single cell experiment (SCE) using bulk RNA experiment (RNAseq) genes signatures?
  Hello Everyone, I have two experiments: single cell (**SCE**) and RNAseq (**RNA**). Each of thes...
• Differential gene expression
  Hi all, I am working with differential gene expression on an affy dataset (2 different cancers)...