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• Determining Which Genes Are Unexpressed In Cell Lines
  I would like to come up with a list of genes that are not expressed in certain cell lines (e.g. H...
• Deferentially expressed genes from FPKM values?
  Hi   I've a matrix for mouse genes with length and FPKM values from 4 different cell types. I w...
• T Cell Specific Gene Expression Data
  I need to do some interaction studies with genes corresponding to T cell. Is there any database w...
• Subgrouping SIngle Cell in RNA-Seq Data Analysis
  Hello dear one, I have a single cell RNA seq data of 100 cells which express -marker A. I want t...
• What Is The Best Way To Get Gene Expression Depending On The Cell Type ?
  Hello all, I have a big gene list with genes not necessarily expressed in all cell types, so let...
• Sperm gene expression
  Hello. I wanted to know which gene are expressed in sperm cells . I checked databases but only ex...
• Best way to present the single cell RNA-seq data and bulk RNA-seq expression data together
  Hi, Do you have any ideas to better represent single cell RNA-seq data and bulk RNA-seq expressi...
• How To Find Microarray Data Of Cancer Cell Lines Having Expression Of All Genes And Mirna?
  How can i find the microarray data of cancer cell line having expression of all genes and miRNA t...
• scRNA-seq, filter low expressed genes based on RPKM value
  Hi everyone! I analyze scRNA-seq data set from GEO, and it already comes in RPKM values for each...
• Dealing With Null Expression Values
  Hi there, This question might sound trivial but how do you deal with null gene expression values...
• How to get the differentially expressed genes in cancer cell lines
  I'm wondering is there a way to calculate the differentially expressed genes in cancer cell lines...
• Should I remove zero-value from my single cell expression matrix before doing differential test?
  If I have an expression matrix with 2 conditions, A and B, and 30 cells in A condition, 40 cells ...
• QUESTION: define RNA expression level of some genes as traits for WGCNA?
  Hi, I am trying to perform WGCNA on a single-cell RNA-seq dataset. I want to find genes which ar...
• How to cluster single cell data using list of markers?
  Hi, I have a (single cell)) RNA Seq data of Marker X expressed by 100 cells and also I have mark...
• Combining Gene Expression of Cell Lines and Primary Tumors
  Hello Dear Community, PIease I need help with the gene expression data from primary tumors and c...
• Ccle Cell Lines- Expression Data-Rma Log2Ratio
  Can someone please help me understand how can i interpret the expression values of the genes in t...
• Smart-seq2 single-cell RNA-Seq
  Hi there, The data generated from Smart-seq2 single-cell RNA-Seq protocol seems to have very unb...
• Duplicate gene symbols converted from UCSC gene id
  Hi, I am a beginner in RNASeq. I am running Cufflinks on my human cell transcriptome analysis. F...
• Parsing gene expression value for a list of genes from GEO
  Hello, I am looking for the gene expression data in GEO with the following keywords, (Pancr...
• p-value calculation when comparing ratios of means (not means of ratios)
  Hello, I apologize in advance for the dumb question but I am no expert in statistics, my course o...
• Batch effect correction in DE analysis of single cell RNA-seq data and visualization
  Hi Everyone, In my experiment, I have cells (same cell type) with 5 different drug treatments. T...
• Relatedness Analysis of mRNA Levels in Cell Lines
  I would like to do a "relatedness" (a tree diagram) analysis based on RNA-seq or microarray expre...