Question: TCONS lincRNA ID to ensembl gene ID conversion
1
gravatar for WMJ
2.2 years ago by
WMJ10
WMJ10 wrote:

Hello,

I have some IDs for lincRNA. The IDs are as such - TCONS_00028360, TCONS_00022572 etc. I need the ensembl gene IDs (like - ENSGxxxxxxxxxx) of the associated lincRNAs. How can I convert these TCONSxxxxxxxxxxx IDs to ENSGxxxxxxxxxxxxx ID?

Thank you.

lincrna tcons id • 2.1k views
ADD COMMENTlink written 2.2 years ago by WMJ10

If you have a document which has both TCONS IDs and corresponding gene IDs in one file, such as merged.gtf, you can do it programmatically. TCONS IDs are temporary and specific to the Run whereas ensembl IDs are universal.

ADD REPLYlink modified 2.2 years ago • written 2.2 years ago by Satyajeet Khare1.3k

Where can I find a file that contains TCON ids as well as ensemble ids and genesymbol? I'm not having much luck finding it on UCSC or ensemble.

ADD REPLYlink written 22 months ago by andrezapico0

andezapico,

TCONS ids are not universal. They are generated per experiment. You need to have the raw results.

ADD REPLYlink written 22 months ago by Satyajeet Khare1.3k
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