Extract features,one feature vector, from each coding/non-coding sequence.

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7.5 years ago

gy852507309 ▴ 10

Hey,

I downloaded the coding and noncoding genes from biomart and got the .fa files,and the task asks for Extract features for the coding and non-coding sequences

Any ideas?thank you i advance

sequence gene features feature vector • 1.6k views

ADD COMMENT • link updated 7.4 years ago by Biostar 20 • written 7.5 years ago by gy852507309 ▴ 10

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the task asks? the task provider will be surely able to help you more than us.

ADD REPLY • link 7.4 years ago by Jorge Amigo 14k

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Not clear what exactly you are asking here. What features are you trying to extract (e.g. exons, introns from coding genes)? Did you just get plain fasta sequence from BioMart (you could have exported exon intron sequences directly from BioMart).

ADD REPLY • link 7.5 years ago by GenoMax 141k

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what features do u use usually? the task is like I need to extract some features from coding and non-coding sequences,and take them as attributes ,the labels:coding and noncoding as target function,then I will train these data with machine learning algorithms:)

ADD REPLY • link 7.5 years ago by gy852507309 ▴ 10

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