How to implement Yabi Importing tools in JSON format?

Question

[genomicswolf]

How to implement Yabi Importing tools in JSON? Where to find JSON signatures for BBMap, VCF and SAM tools and other bioinformatics software? Should I write them on my own? is there any Yabi cookbook/recipes for that?

Answer 1

[Pierre Lindenbaum]

Where to find JSON signatures for BBMap, VCF and SAM

I don't know 'Yabi' but there are some avro schemas (VCF, SAM... ) from the CA4GH : https://github.com/ga4gh/schemas

You might have to write the converters, or look into the other projects under https://github.com/ga4gh

[genomicswolf]

thank you for trying to help, but we need to cope with Yabi settings specifically