construct a co-expression network of coding-noncoding genes

Question

[elhamdallalbashi]

Hi All, I have datasets derived from RNAseq experiments,I did differential expression for coding and lncoding RNA. I want to construct a co-expression network of these coding-noncoding genes,what should I do?Can you recommend software?

I should construct a co-expression network for each experiment OR I can select special genes and lncRNA from all of experiments(I mean after doing meta analysis ,set filter and choose key genes) for constructing a co-expression network ?

[Prasad]

try WGCNA