Question: Stamps install problem--run stampy.py but could not find maptools module
0
gravatar for xinwangcau
2.6 years ago by
xinwangcau0
xinwangcau0 wrote:

I tried to instal the Stampy. However I face with the following error: Anyone knew how to solve this problem? Thanks

/usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^

gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -fPIC python2.7-config --includes -c ext/readalign/algebras.cc -o build/linux-x86_64-2.7-ucs4/algebras.o cp -r build/python2.7/* .

g++ python2.7-config --ldflags -pthread -shared build/linux-x86_64-2.7-ucs4/pyx/maptools.o build/linux-x86_64-2.7-ucs4/c/maputils.o build/linux-x86_64-2.7-ucs4/c/alignutils.o build/linux-x86_64-2.7-ucs4/readalign.o build/linux-x86_64-2.7-ucs4/algebras.o build/linux-x86_64-2.7-ucs4/frontend.o -o maptools.so

/usr/bin/ld: build/linux-x86_64-2.7-ucs4/pyx/maptools.o: unrecognised relocation (0x2a) in section .text' /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status make[2]: *** [buildall] Error 1 make[2]: Leaving directory/home/xinw/software/stampy-1.0.30' make[1]: * [build-stampy] Error 2 make[1]: Leaving directory `/home/xinw/software/stampy-1.0.30' make: * [all] Error 2

alignment • 1.2k views
ADD COMMENTlink modified 2.4 years ago by mozesb0 • written 2.6 years ago by xinwangcau0
0
gravatar for reuth
2.5 years ago by
reuth0
reuth0 wrote:

by googling it looks like stumpy needs binutils of version 2.26.

ADD COMMENTlink modified 2.5 years ago • written 2.5 years ago by reuth0
0
gravatar for mozesb
2.4 years ago by
mozesb0
mozesb0 wrote:

Hi all,

I am running into exactly the same issue and upgrading binutils did not solve the problem. Xinwangcau, did you manage to find a fix?

ADD COMMENTlink written 2.4 years ago by mozesb0

Hi mozesb!

Did you find a solution finally? I have the same problem.

ADD REPLYlink written 2.3 years ago by chukreev550
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