Question: Stamps install problem--run but could not find maptools module
gravatar for xinwangcau
3.2 years ago by
xinwangcau0 wrote:

I tried to instal the Stampy. However I face with the following error: Anyone knew how to solve this problem? Thanks

/usr/include/c++/4.8/backward/backward_warning.h:32:2: warning: #warning This file includes at least one deprecated or antiquated header which may be removed without further notice at a future date. Please use a non-deprecated interface with equivalent functionality instead. For a listing of replacement headers and interfaces, consult the file backward_warning.h. To disable this warning use -Wno-deprecated. [-Wcpp] #warning \ ^

gcc -pthread -fno-strict-aliasing -DNDEBUG -g -fwrapv -O2 -Wall -fPIC python2.7-config --includes -c ext/readalign/ -o build/linux-x86_64-2.7-ucs4/algebras.o cp -r build/python2.7/* .

g++ python2.7-config --ldflags -pthread -shared build/linux-x86_64-2.7-ucs4/pyx/maptools.o build/linux-x86_64-2.7-ucs4/c/maputils.o build/linux-x86_64-2.7-ucs4/c/alignutils.o build/linux-x86_64-2.7-ucs4/readalign.o build/linux-x86_64-2.7-ucs4/algebras.o build/linux-x86_64-2.7-ucs4/frontend.o -o

/usr/bin/ld: build/linux-x86_64-2.7-ucs4/pyx/maptools.o: unrecognised relocation (0x2a) in section .text' /usr/bin/ld: final link failed: Bad value collect2: error: ld returned 1 exit status make[2]: *** [buildall] Error 1 make[2]: Leaving directory/home/xinw/software/stampy-1.0.30' make[1]: * [build-stampy] Error 2 make[1]: Leaving directory `/home/xinw/software/stampy-1.0.30' make: * [all] Error 2

alignment • 1.5k views
ADD COMMENTlink modified 3.0 years ago by mozesb0 • written 3.2 years ago by xinwangcau0
gravatar for reuth
3.2 years ago by
reuth0 wrote:

by googling it looks like stumpy needs binutils of version 2.26.

ADD COMMENTlink modified 3.2 years ago • written 3.2 years ago by reuth0
gravatar for mozesb
3.0 years ago by
mozesb0 wrote:

Hi all,

I am running into exactly the same issue and upgrading binutils did not solve the problem. Xinwangcau, did you manage to find a fix?

ADD COMMENTlink written 3.0 years ago by mozesb0

Hi mozesb!

Did you find a solution finally? I have the same problem.

ADD REPLYlink written 3.0 years ago by chukreev550
Please log in to add an answer.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 1775 users visited in the last hour