Are there any new/novel R packages and other software to compare a 100 of VCF files?

0

Entering edit mode

9.0 years ago

genomicswolf ▴ 20

Are there any new/novel R packages and other software to compare a 100 of VCF files? Tried GATK and VCF tools and nextGene. Need a better solution for a hunderds of VCFs.

vcf r • 1.7k views

ADD COMMENT • link 9.0 years ago by genomicswolf ▴ 20

0

Entering edit mode

Could you be more specific on what you aim to achieve? "Compare" is quite generic.

ADD REPLY • link 9.0 years ago by WouterDeCoster 48k

0

Entering edit mode

find differences in vcfs, thx

ADD REPLY • link 9.0 years ago by genomicswolf ▴ 20

0

Entering edit mode

Oh right now I understand. Differences.

Could you be more specific on what you aim to achieve? "Differences" is quite generic.

ADD REPLY • link 9.0 years ago by WouterDeCoster 48k

0

Entering edit mode

Not new and not sure whether it fits your needs but did you take a look at the VariantAnnotation bioconductor package?

ADD REPLY • link 9.0 years ago by ddiez ★ 2.0k

Login before adding your answer.