how to get transcription factors for my gene list
1
0
Entering edit mode
7.6 years ago

i have list of 90 genes from zebrafish, and how to get transcription factors for my list.is there any online tools for obtaining TFs

RNA-Seq genome next-gen gene blast • 2.5k views
ADD COMMENT
0
Entering edit mode

have you tried AnimalTFDB

ADD REPLY
0
Entering edit mode

i have tried but it has only 1900 transcription factors list , and none of it not matching to my gene list.

ADD REPLY
0
Entering edit mode

might be non of the genes are encoding for TF. Here are few previously asked similar question 1, 2, 3

ADD REPLY
0
Entering edit mode
7.6 years ago
dyollluap ▴ 310

I recommend using a query in the ZebrafishMine http://zmine.zfin.org It enables you to search for features from a gene list. For example, using Gene Ontology terms for transcription factors to identify TFs in your list.

ADD COMMENT

Login before adding your answer.

Traffic: 2200 users visited in the last hour
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6