Question: MSMS simulation tool
0
gravatar for prostoesh
3.9 years ago by
prostoesh10
Russian Federation
prostoesh10 wrote:

Anyone knows how to run MSMS? I am trying to simulate a scenario, where a population splits 2 times (separately), resulting in 3 subpopulations. I used a command

msms -ms 5 3 -t 5 -N 5000000 -I 3 5 0 0 -es 1.5 1 0.5 -es 7.5 1 0.5

but when i parse the output in R's PopGenome with

GENOME.class@populations

i got a list of 1 population, not 3!

is there a way to make this work? i've read the manuals for both ms and msms, but i still got a feeling i'm not 100% sure what exactly i am doing

msms software error • 1.4k views
ADD COMMENTlink modified 3.9 years ago • written 3.9 years ago by prostoesh10
Please log in to add an answer.

Help
Access

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 847 users visited in the last hour