I am hoping someone can point me towards a program that can calculate recombination bin sizes in a recombinant inbred line population.
I have a linkage map for this population and the genotype data. Now I'd like to see where the recombinations occur and how big or small the bins are. I used the R package hsphase to visualize the recombination blocks but unfortunately this package does not seem to have a function to calculate the bin sizes.
I also see a couple of papers using Mapmaker 3.0 for this but the documentation seems to be rather not well-elucidating for this particular problem. I would greatly appreciate any help. Thank you all.