Similar posts • Search »

• trait file for wgcna analysis
  How to create trait file for stress and normal samples for wgcna analysis....I am working on zebr...
• WGCNA, analysis on two data sets
  Hello, I have two healthy and cancer data sets and want to do WGCNA analysis. My goal is to dete...
• binary phenotype or discrete traits in wgcna analysis
  In **WGCNA** R package how do you correlate identified co-expression modules with binary phenotyp...
• WGCNA Difficulty in making clinical trait data file to match cluster-filter samples
  Hi I would be very grateful for some help. I am trying to use WGCNA to perform network analysi...
• WGCNA module significance ?
  Hello, I Recently performed WGCNA analysis of microarray dataset. This dataset consists of two f...
• WGCNA package for R - Gene coexpression analysis
  Hello! Following the instructions in "Tutorial for the WGCNA package for R II. Consensus network...
• wgcna trait file for affymetrix cel files
  I am working on affymetrix cel files of zebrafish, and I have 74 normal and treated samples. For ...
• WGCNA analysis in normal and tumor case
  Hi I want to perform WGCNA analysis, i am having RNA seq data (gene expression) in normal and tu...
• WGCNA requires always a trait data?
  Hi, I did an RNA-seq analysis and Im planning to analyze with WGCNA, I have seen several papers w...
• How to make annotation file for WGCNA analysis of RNA Seq data?
  hello all, I want to study the co-expression analysis using RNA seq data by WGCNA analysis ( Orga...
• Highly correlated modules with clinical trait does not cluster together in eigengene dendrogram, WGCNA.
  I am trying to identify clinically relevant hub genes using WGCNA. To do so, I have followed WGCN...
• WGCNA analysis and "survival time" as a trait?
  Hi everyone! I have seen articles doing WGCNA analysis on survival as the/a trait. Should there ...
• WGCNA analysis for gene of interest
  How to start WGCNA analysis keeping your gene(s) of interest from the starting.. WGCNA tutorials ...
• how to use singular value detection for identification of modules in wgcna
  i am using WGCNA and identified 12modules for 6 traits. to further understand the relation betwee...
• How to prepare trait data file of categorical trait with more than two levels for WGCNA?
  Hi everyone, I want to do WGCNA and estimate the correlation of modules with clinical traits. Th...
• Solved (How to create "trait data" file for WGCNA )
  Hi, I have mice microarray time course data. The study design as follows, mice were treated with...
• wgcna annotation file for human data
  I am trying to run WGCNA analysis for human expression data. Specifically I want to do the module...
• Could I use OS(overall survival) as the trait data in the WGCNA analysis?
  I have limited trait data. Could I use OS(overall survival) as the trait data in the WGCNA analys...
• Wgcna-Trait File For Microarray Data
  Hi, I am working on plant microarray data in drought condition. I am using WGCNA (R package) for ...
• How to calculate correlations between modules and samples in WGCNA?
  Hi all, After reading some WGCNA tutorials, I learned how to get some common values (e.g : c...
• WGCNA pearson or bicor? Also, should I adjust module correlation Pvalues by Bonferroni?
  Hello! I am performing a network analysis on WGCNA. I had to separate the samples into 2 network...