I'm trying to create graphical genotypes using my unphased SNP data using inPHAP software. The software requires two input files, 1). hapmap file in vcf format and 2). tab delimited metadata text file including related information for grouping the individuals. I could load both files but my metadata information is not recognized by the program and it's shown as red crosses instead of colored bars. Can anyone tell me what is wrong with my metadata input file?
Below is the format of my metadata file,
Individual_ID Trait Population 10001 AL 1 10002 AC 1 10003 AL 2 10004 AL 2