Kissplice: Output file for phylogenetic and population structure analyses
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4.4 years ago
AidaMG • 0

Hello,

I used Kissplice to identify SNPs in RNA-seq data without reference. I'm trying to use those SNPs for population structure analyses (admixture/structure) and for phylogenetic analyses.

I'm not sure if I have to use the output file "result_type_0.fa" or the "type_0.psl", and in either case, I don't know what is the way to change the format to ".bed" or ".vcf".

Any suggestions and comments would be very appreciated.

Thank you very much.

RNA-Seq SNP • 996 views
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