Entering edit mode
7.4 years ago
julie.dragon
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0
I'm looking for a range of genes called present from deep sequencing of FFPE samples. I see this for microarray but have yet to find it for NGS. Not sure what to expect here, but I'm seeing only about 8% of genes present (min 2%, max 40%). Not sure these samples are worth more effort. Any recommendations are welcomed.
Do you sequence RNA or DNA ? If its DNA, then it looks bad indeed. If it is RNA, it could be ok : only a fraction of the genome is expressed in a given tissue in higher eukaryotes.