pysam and samtools
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7.4 years ago
se69farahi • 0

I have installed pysam and samtools in my linux and use visual studio code for debug my python code. but I can not import pysam in visual studio, what is the problem ?

next-gen alignment • 2.7k views
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You mean you get an error? Could you be more informative?

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yes I get error, It says module name pysam does not found.

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If you have linux then you can simply call python from terminal and import pysam in it as follows,

python
>>> import pysam
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Indeed, if you could confirm if pysam works in your "normal" python interpreter, then we can look at "visual studio" afterwards. I've never used that, but okay we'll manage.

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yes,my terminal is work but I could not run it in my visual studio code.

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How did you install it in visual studio? I find here that there is a specific way for visual studio.

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