Question: (Closed) Assigning atom numbers to chemical structures
gravatar for Sara
4.1 years ago by
Sara0 wrote:

Hello everyone I have to analyze interactions of some compounds with particular focus on some specific atoms. I downloaded those compounds from pubchem but the carbon atom numbering is different from what I found from literature and previous research (when viewed from different visualization tools). So I manually drew the structures using ChemDraw but it also assigns different atom numbers to carbon. I edited those serial numbers in chemDraw and ChemBio3D Ultra and saved it in pdb format but when I viewed this pdb file in pymol, it displayed different atom numbers. I know which atom number I want to focus on but it is difficult for me to manually search that atom number for multiple compounds. For example my focus is carbon atom 11 but it is labelled as say C-16 in 3D structure. In short visualization tools label the carbon atoms differently from what I found in literature. Please help me how to get the desired atom numbering. Thanks in advance

pymol atom numbering chemdraw • 2.2k views
ADD COMMENTlink written 4.1 years ago by Sara0

Hello Sara!

We believe that this post does not fit the main topic of this site.

Solution found.

For this reason we have closed your question. This allows us to keep the site focused on the topics that the community can help with.

If you disagree please tell us why in a reply below, we'll be happy to talk about it.


ADD REPLYlink written 4.1 years ago by Sara0
Please log in to add an answer.
The thread is closed. No new answers may be added.


Use of this site constitutes acceptance of our User Agreement and Privacy Policy.
Powered by Biostar version 2.3.0
Traffic: 2210 users visited in the last hour