Hello All. I study about Run of Hemozygosity in sheep. I have file in plink format (ped & map) for 50k Ovine beadchip. my map file were contracted base one Oar3.1. as you know in 2015/11/20 new genome assemblies of Oar_v4.0 was released. now, these are my questions:
1- do I should update my map file base on new assembly?
2- how can I do this?
I am sorry if my question is simple, I am new in bioinformatic analysis.